Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: mSE_10035
Genomic locus: chr4:130173837-130218356
Size/Length: 44519 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001159606
Gene Symbol: Pum1
Chromosome: chr4
TSS: 130219273 (Transcription start site)
TES: 130337479 (Transcription end site)
Strand: +
Number of Exons: 18
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr4:130173837-130218356
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10035

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036141 mSE_10035 chr4 130173837 130174893 1056 148.66
CM036142 mSE_10035 chr4 130176206 130179294 3088 3100
CM036143 mSE_10035 chr4 130179432 130181242 1810 3100
CM036144 mSE_10035 chr4 130182830 130183287 457 169.9
CM036145 mSE_10035 chr4 130184453 130185814 1361 985.49
CM036146 mSE_10035 chr4 130186136 130186761 625 349.02
CM036147 mSE_10035 chr4 130186906 130188087 1181 913.63
CM036148 mSE_10035 chr4 130189267 130190094 827 147.63
CM036149 mSE_10035 chr4 130191198 130192225 1027 114.31
CM036150 mSE_10035 chr4 130192389 130193159 770 217.88
CM036151 mSE_10035 chr4 130193360 130197719 4359 3100
CM036152 mSE_10035 chr4 130198374 130199668 1294 451.64
CM036153 mSE_10035 chr4 130199998 130200367 369 97.69
CM036154 mSE_10035 chr4 130200392 130202182 1790 1531.2
CM036155 mSE_10035 chr4 130203380 130204085 705 287.12
CM036156 mSE_10035 chr4 130205045 130205782 737 169.35
CM036157 mSE_10035 chr4 130206814 130207929 1115 461.61
CM036158 mSE_10035 chr4 130208043 130208890 847 424.67
CM036159 mSE_10035 chr4 130208940 130209754 814 515.08
CM036160 mSE_10035 chr4 130209794 130211249 1455 617.15
CM036161 mSE_10035 chr4 130211250 130212057 807 321.3
CM036162 mSE_10035 chr4 130212811 130213289 478 213.48
CM036163 mSE_10035 chr4 130214664 130216601 1937 1012.19
CM036164 mSE_10035 chr4 130216612 130218356 1744 461.93