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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10036
Genomic locus: chr4:123285167-123347568
Size/Length: 62401 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001199137
Gene Symbol: Macf1
Chromosome: chr4
TSS: 123026875 (Transcription start site)
TES: 123361603 (Transcription end site)
Strand: -
Number of Exons: 93
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr4:123285167-123347568
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10036

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036106 mSE_10036 chr4 123285167 123285773 606 184.1
CM036107 mSE_10036 chr4 123286206 123286669 463 97.37
CM036108 mSE_10036 chr4 123287670 123288299 629 229.87
CM036109 mSE_10036 chr4 123290510 123291358 848 206.46
CM036110 mSE_10036 chr4 123291712 123292144 432 92.02
CM036111 mSE_10036 chr4 123293712 123296033 2321 2341.66
CM036112 mSE_10036 chr4 123298907 123303728 4821 3100
CM036113 mSE_10036 chr4 123303827 123304733 906 716.37
CM036114 mSE_10036 chr4 123304894 123305945 1051 599.01
CM036115 mSE_10036 chr4 123306028 123307159 1131 445.42
CM036116 mSE_10036 chr4 123307187 123308644 1457 497.82
CM036117 mSE_10036 chr4 123308686 123309355 669 306.7
CM036118 mSE_10036 chr4 123309381 123313270 3889 1579.02
CM036119 mSE_10036 chr4 123314359 123315647 1288 280.43
CM036120 mSE_10036 chr4 123319797 123321314 1517 351.74
CM036121 mSE_10036 chr4 123322448 123323307 859 354.12
CM036122 mSE_10036 chr4 123329430 123331466 2036 689.42
CM036123 mSE_10036 chr4 123331998 123333125 1127 403.87
CM036124 mSE_10036 chr4 123333688 123334342 654 113.32
CM036125 mSE_10036 chr4 123339318 123341628 2310 806.57
CM036126 mSE_10036 chr4 123341653 123345633 3980 3100
CM036127 mSE_10036 chr4 123346592 123347568 976 257.24