Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10037
Genomic locus:	chr2:165678683-165727003
Size/Length:	48320 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001291158
Gene Symbol:	Zmynd8
Chromosome:	chr2
TSS:	165609651 (Transcription start site)
TES:	165703937 (Transcription end site)
Strand:	-
Number of Exons:	24
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:165678683-165727003
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10037

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035711	mSE_10037	chr2	165678683	165679992	1309	95.94
CM035712	mSE_10037	chr2	165681856	165688234	6378	3100
CM035713	mSE_10037	chr2	165691872	165693179	1307	133.27
CM035714	mSE_10037	chr2	165693497	165695378	1881	391.28
CM035715	mSE_10037	chr2	165698734	165703929	5195	1460.81
CM035716	mSE_10037	chr2	165704032	165709239	5207	3052.46
CM035717	mSE_10037	chr2	165709271	165713535	4264	3100
CM035718	mSE_10037	chr2	165713564	165714838	1274	161.76
CM035719	mSE_10037	chr2	165720182	165722747	2565	390.1
CM035720	mSE_10037	chr2	165723662	165727003	3341	1443.79