Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10038
Genomic locus:	chr8:28332893-28390672
Size/Length:	57779 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_007918
Gene Symbol:	Eif4ebp1
Chromosome:	chr8
TSS:	28370798 (Transcription start site)
TES:	28386128 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr8:28332893-28390672
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10038

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037106	mSE_10038	chr8	28332893	28335407	2514	1979.81
CM037107	mSE_10038	chr8	28342418	28348243	5825	3100
CM037108	mSE_10038	chr8	28349516	28353005	3489	3100
CM037109	mSE_10038	chr8	28353512	28354197	685	126.17
CM037110	mSE_10038	chr8	28359967	28363971	4004	2686.8
CM037111	mSE_10038	chr8	28364415	28365957	1542	396.89
CM037112	mSE_10038	chr8	28367790	28369169	1379	170.86
CM037113	mSE_10038	chr8	28369412	28370742	1330	645.76
CM037114	mSE_10038	chr8	28370832	28373207	2375	1417.6
CM037115	mSE_10038	chr8	28373383	28374798	1415	138.91
CM037116	mSE_10038	chr8	28375510	28376671	1161	121.34
CM037117	mSE_10038	chr8	28388821	28389885	1064	281.01
CM037118	mSE_10038	chr8	28390119	28390672	553	92.17