Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10039
Genomic locus:	chr5:118884338-118934893
Size/Length:	50555 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_172424
Gene Symbol:	Med13l
Chromosome:	chr5
TSS:	119010727 (Transcription start site)
TES:	119215446 (Transcription end site)
Strand:	+
Number of Exons:	31
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr5:118884338-118934893
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10039

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036468	mSE_10039	chr5	118884338	118889636	5298	3100
CM036469	mSE_10039	chr5	118893405	118898044	4639	3100
CM036470	mSE_10039	chr5	118898168	118900230	2062	2679.9
CM036471	mSE_10039	chr5	118902060	118902774	714	101.56
CM036472	mSE_10039	chr5	118913954	118915651	1697	278.68
CM036473	mSE_10039	chr5	118915864	118916700	836	124.46
CM036474	mSE_10039	chr5	118927034	118928096	1062	269.72
CM036475	mSE_10039	chr5	118928364	118929340	976	283.1
CM036476	mSE_10039	chr5	118929500	118931468	1968	511.18
CM036477	mSE_10039	chr5	118931923	118934893	2970	1029.82