Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10040
Genomic locus:	chr4:140815312-140866990
Size/Length:	51678 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_010139
Gene Symbol:	Epha2
Chromosome:	chr4
TSS:	140857135 (Transcription start site)
TES:	140885299 (Transcription end site)
Strand:	+
Number of Exons:	17
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr4:140815312-140866990
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10040

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036264	mSE_10040	chr4	140815312	140817099	1787	122.91
CM036265	mSE_10040	chr4	140825506	140826294	788	102.63
CM036266	mSE_10040	chr4	140827266	140829998	2732	105.88
CM036267	mSE_10040	chr4	140832696	140835964	3268	1312.33
CM036268	mSE_10040	chr4	140836055	140842213	6158	3100
CM036269	mSE_10040	chr4	140842426	140849324	6898	3100
CM036270	mSE_10040	chr4	140852022	140852931	909	150.73
CM036271	mSE_10040	chr4	140857735	140861800	4065	458.43
CM036272	mSE_10040	chr4	140865008	140866990	1982	114.81