Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10042
Genomic locus:	chr10:6053949-6104631
Size/Length:	50682 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_031185
Gene Symbol:	Akap12
Chromosome:	chr10
TSS:	5987069 (Transcription start site)
TES:	6080212 (Transcription end site)
Strand:	-
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr10:6053949-6104631
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10042

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033567	mSE_10042	chr10	6053949	6054631	682	138.77
CM033568	mSE_10042	chr10	6055419	6058221	2802	3100
CM033569	mSE_10042	chr10	6058363	6059000	637	194.29
CM033570	mSE_10042	chr10	6059794	6063514	3720	1836.98
CM033571	mSE_10042	chr10	6065930	6066490	560	95.95
CM033572	mSE_10042	chr10	6069796	6071008	1212	190.58
CM033573	mSE_10042	chr10	6077099	6082835	5736	3100
CM033574	mSE_10042	chr10	6083859	6085753	1894	718.64
CM033575	mSE_10042	chr10	6086417	6087011	594	137.05
CM033576	mSE_10042	chr10	6090983	6093614	2631	775.5
CM033577	mSE_10042	chr10	6093686	6098985	5299	3100
CM033578	mSE_10042	chr10	6101523	6104631	3108	2380.35