Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10043
Genomic locus:	chr11:62301119-62339193
Size/Length:	38074 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_028448
Gene Symbol:	Cenpv
Chromosome:	chr11
TSS:	62338445 (Transcription start site)
TES:	62352763 (Transcription end site)
Strand:	-
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:62301119-62339193
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10043

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033931	mSE_10043	chr11	62301119	62301736	617	91.66
CM033932	mSE_10043	chr11	62302230	62303631	1401	357.9
CM033933	mSE_10043	chr11	62306295	62311188	4893	3100
CM033934	mSE_10043	chr11	62311691	62313193	1502	549.8
CM033935	mSE_10043	chr11	62313516	62314878	1362	215.2
CM033936	mSE_10043	chr11	62315533	62316906	1373	350.17
CM033937	mSE_10043	chr11	62317105	62317797	692	180.31
CM033938	mSE_10043	chr11	62319576	62321713	2137	925.31
CM033939	mSE_10043	chr11	62321852	62322229	377	139.29
CM033940	mSE_10043	chr11	62322471	62327504	5033	3100
CM033941	mSE_10043	chr11	62327902	62328521	619	219.68
CM033942	mSE_10043	chr11	62332096	62332929	833	106.92
CM033943	mSE_10043	chr11	62336734	62339193	2459	491.63