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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10044
Genomic locus: chr9:40564562-40615606
Size/Length: 51044 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_031165
Gene Symbol: Hspa8
Chromosome: chr9
TSS: 40609355 (Transcription start site)
TES: 40613282 (Transcription end site)
Strand: +
Number of Exons: 9
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr9:40564562-40615606
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10044

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037434 mSE_10044 chr9 40564562 40565766 1204 275.29
CM037435 mSE_10044 chr9 40565822 40566442 620 118.56
CM037436 mSE_10044 chr9 40573263 40575825 2562 1946.78
CM037437 mSE_10044 chr9 40575929 40577010 1081 631.88
CM037438 mSE_10044 chr9 40577158 40577779 621 124.82
CM037439 mSE_10044 chr9 40578111 40579652 1541 779.5
CM037440 mSE_10044 chr9 40579827 40581213 1386 552.96
CM037441 mSE_10044 chr9 40582196 40582669 473 103.71
CM037442 mSE_10044 chr9 40584059 40584455 396 130.45
CM037443 mSE_10044 chr9 40584549 40584893 344 99.8
CM037444 mSE_10044 chr9 40587594 40594026 6432 3100
CM037445 mSE_10044 chr9 40600241 40601041 800 295.35
CM037446 mSE_10044 chr9 40601313 40602420 1107 803.22
CM037447 mSE_10044 chr9 40602483 40604805 2322 1685.85
CM037448 mSE_10044 chr9 40605822 40608765 2943 3109.98
CM037449 mSE_10044 chr9 40609314 40611191 1877 447.24
CM037450 mSE_10044 chr9 40611476 40612455 979 135.4
CM037451 mSE_10044 chr9 40612510 40613005 495 113.32
CM037452 mSE_10044 chr9 40613082 40614406 1324 758.43
CM037453 mSE_10044 chr9 40614559 40615606 1047 156.36