Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10045
Genomic locus:	chr2:31992749-32038975
Size/Length:	46226 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol:	Bat2l
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:31992749-32038975
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10045

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035531	mSE_10045	chr2	31992749	31993488	739	243.64
CM035532	mSE_10045	chr2	31995395	31996722	1327	519.74
CM035533	mSE_10045	chr2	32006627	32009768	3141	805.86
CM035534	mSE_10045	chr2	32011688	32013530	1842	512.35
CM035535	mSE_10045	chr2	32013766	32021423	7657	3100
CM035536	mSE_10045	chr2	32021470	32026822	5352	3042.2
CM035537	mSE_10045	chr2	32027196	32028361	1165	180.92
CM035538	mSE_10045	chr2	32028550	32033881	5331	3100
CM035539	mSE_10045	chr2	32037378	32038975	1597	103.82