Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10046
Genomic locus:	chr17:29573487-29631936
Size/Length:	58449 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_008842
Gene Symbol:	Pim1
Chromosome:	chr17
TSS:	29627989 (Transcription start site)
TES:	29632404 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr17:29573487-29631936
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10046

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035035	mSE_10046	chr17	29573487	29574539	1052	204.7
CM035036	mSE_10046	chr17	29576604	29577321	717	93.69
CM035037	mSE_10046	chr17	29578835	29580174	1339	155.47
CM035038	mSE_10046	chr17	29582249	29583398	1149	133.87
CM035039	mSE_10046	chr17	29583952	29589679	5727	3100
CM035040	mSE_10046	chr17	29593377	29599097	5720	3100
CM035041	mSE_10046	chr17	29599139	29601319	2180	1108.12
CM035042	mSE_10046	chr17	29601370	29603226	1856	1418.17
CM035043	mSE_10046	chr17	29603855	29606643	2788	1798.16
CM035044	mSE_10046	chr17	29612895	29614285	1390	223.46
CM035045	mSE_10046	chr17	29621911	29623298	1387	426.01
CM035046	mSE_10046	chr17	29626050	29627248	1198	309
CM035047	mSE_10046	chr17	29627698	29631936	4238	1442.61