Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10047
Genomic locus:	chr7:29703685-29758123
Size/Length:	54438 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_021895
Gene Symbol:	Actn4
Chromosome:	chr7
TSS:	29678272 (Transcription start site)
TES:	29747299 (Transcription end site)
Strand:	-
Number of Exons:	21
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr7:29703685-29758123
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10047

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036853	mSE_10047	chr7	29703685	29705701	2016	223.99
CM036854	mSE_10047	chr7	29709186	29710552	1366	106.85
CM036855	mSE_10047	chr7	29713874	29717084	3210	479.4
CM036856	mSE_10047	chr7	29718592	29719574	982	120.16
CM036857	mSE_10047	chr7	29720830	29727409	6579	2266.25
CM036858	mSE_10047	chr7	29727662	29729275	1613	229.85
CM036859	mSE_10047	chr7	29730251	29733923	3672	1713.33
CM036860	mSE_10047	chr7	29737800	29738345	545	94.05
CM036861	mSE_10047	chr7	29738435	29739497	1062	411.79
CM036862	mSE_10047	chr7	29739613	29740301	688	128.98
CM036863	mSE_10047	chr7	29740694	29741721	1027	98.98
CM036864	mSE_10047	chr7	29742889	29743693	804	131.76
CM036865	mSE_10047	chr7	29747492	29749312	1820	1413.93
CM036866	mSE_10047	chr7	29749359	29753015	3656	3100
CM036867	mSE_10047	chr7	29753507	29758123	4616	3100