Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10048
Genomic locus:	chr4:106508286-106544045
Size/Length:	35759 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_025590
Gene Symbol:	Acot11
Chromosome:	chr4
TSS:	106417165 (Transcription start site)
TES:	106472436 (Transcription end site)
Strand:	-
Number of Exons:	16
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr4:106508286-106544045
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10048

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036083	mSE_10048	chr4	106508286	106509385	1099	99.15
CM036084	mSE_10048	chr4	106511725	106512661	936	512.97
CM036085	mSE_10048	chr4	106512832	106516455	3623	1075.68
CM036086	mSE_10048	chr4	106519186	106522013	2827	3100
CM036087	mSE_10048	chr4	106525766	106533379	7613	2161.47
CM036088	mSE_10048	chr4	106533427	106540608	7181	3100
CM036089	mSE_10048	chr4	106540803	106543433	2630	572.29
CM036090	mSE_10048	chr4	106543487	106544045	558	264.62