Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10049
Genomic locus:	chr17:46912492-46955394
Size/Length:	42902 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_025433
Gene Symbol:	Rpl7l1
Chromosome:	chr17
TSS:	46910855 (Transcription start site)
TES:	46919605 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr17:46912492-46955394
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10049

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035104	mSE_10049	chr17	46912492	46913387	895	178.64
CM035105	mSE_10049	chr17	46915755	46917072	1317	225.49
CM035106	mSE_10049	chr17	46919171	46920743	1572	348.51
CM035107	mSE_10049	chr17	46929271	46931365	2094	835.76
CM035108	mSE_10049	chr17	46932911	46941229	8318	3100
CM035109	mSE_10049	chr17	46941802	46942825	1023	159.94
CM035110	mSE_10049	chr17	46942918	46943965	1047	230.33
CM035111	mSE_10049	chr17	46943967	46945735	1768	599.84
CM035112	mSE_10049	chr17	46945761	46949857	4096	3100
CM035113	mSE_10049	chr17	46949860	46953966	4106	3100
CM035114	mSE_10049	chr17	46954224	46955394	1170	319.09