Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10050
Genomic locus:	chr11:95841291-95882990
Size/Length:	41699 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_009951
Gene Symbol:	Igf2bp1
Chromosome:	chr11
TSS:	95818477 (Transcription start site)
TES:	95867258 (Transcription end site)
Strand:	-
Number of Exons:	15
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:95841291-95882990
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10050

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034057	mSE_10050	chr11	95841291	95846535	5244	3100
CM034058	mSE_10050	chr11	95849285	95850463	1178	219.65
CM034059	mSE_10050	chr11	95850514	95852429	1915	1421.2
CM034060	mSE_10050	chr11	95852756	95855785	3029	1931.83
CM034061	mSE_10050	chr11	95856230	95856979	749	97.49
CM034062	mSE_10050	chr11	95864425	95865123	698	235.92
CM034063	mSE_10050	chr11	95865292	95867521	2229	1813.81
CM034064	mSE_10050	chr11	95867579	95869973	2394	1975.31
CM034065	mSE_10050	chr11	95872114	95872783	669	274.11
CM034066	mSE_10050	chr11	95877193	95881421	4228	3100
CM034067	mSE_10050	chr11	95881657	95882485	828	417.28
CM034068	mSE_10050	chr11	95882509	95882990	481	103.1