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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10051
Genomic locus: chr7:52803839-52838420
Size/Length: 34581 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001243052
Gene Symbol: Bcat2
Chromosome: chr7
TSS: 52826648 (Transcription start site)
TES: 52845080 (Transcription end site)
Strand: +
Number of Exons: 11
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr7:52803839-52838420
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10051

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036910 mSE_10051 chr7 52803839 52806869 3030 1283.68
CM036911 mSE_10051 chr7 52807106 52808041 935 195.42
CM036912 mSE_10051 chr7 52808590 52810801 2211 155.47
CM036913 mSE_10051 chr7 52812505 52819030 6525 3100
CM036914 mSE_10051 chr7 52819410 52832807 13397 3119.16
CM036915 mSE_10051 chr7 52833552 52834527 975 790.43
CM036916 mSE_10051 chr7 52835726 52836834 1108 463.52
CM036917 mSE_10051 chr7 52837902 52838420 518 103.2