Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10053
Genomic locus:	chr3:88365985-88420427
Size/Length:	54442 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_025448
Gene Symbol:	Ssr2
Chromosome:	chr3
TSS:	88383592 (Transcription start site)
TES:	88392335 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr3:88365985-88420427
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10053

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035867	mSE_10053	chr3	88365985	88369454	3469	483.83
CM035868	mSE_10053	chr3	88369468	88371043	1575	314.26
CM035869	mSE_10053	chr3	88371102	88379267	8165	3100
CM035870	mSE_10053	chr3	88379284	88380294	1010	648.89
CM035871	mSE_10053	chr3	88380358	88380914	556	298.07
CM035872	mSE_10053	chr3	88380974	88381698	724	348.24
CM035873	mSE_10053	chr3	88381809	88384666	2857	1761.91
CM035874	mSE_10053	chr3	88384796	88385399	603	170.53
CM035875	mSE_10053	chr3	88386448	88388074	1626	569.94
CM035876	mSE_10053	chr3	88389229	88392421	3192	1047.69
CM035877	mSE_10053	chr3	88393801	88395984	2183	621.9
CM035878	mSE_10053	chr3	88406109	88406977	868	347.06
CM035879	mSE_10053	chr3	88407130	88409420	2290	1434.69
CM035880	mSE_10053	chr3	88418578	88420427	1849	213.61