Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10054
Genomic locus:	chr4:104837228-104899554
Size/Length:	62326 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_080555
Gene Symbol:	Ppap2b
Chromosome:	chr4
TSS:	104829951 (Transcription start site)
TES:	104905372 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr4:104837228-104899554
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10054

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036073	mSE_10054	chr4	104837228	104838375	1147	360.76
CM036074	mSE_10054	chr4	104841197	104844490	3293	1122.53
CM036075	mSE_10054	chr4	104853698	104854892	1194	165.21
CM036076	mSE_10054	chr4	104865945	104870760	4815	2302.73
CM036077	mSE_10054	chr4	104873001	104874157	1156	250.93
CM036078	mSE_10054	chr4	104874400	104875425	1025	226.18
CM036079	mSE_10054	chr4	104875665	104880855	5190	2674.2
CM036080	mSE_10054	chr4	104881964	104883116	1152	228.82
CM036081	mSE_10054	chr4	104885011	104889460	4449	2237.73
CM036082	mSE_10054	chr4	104893231	104899554	6323	3100