Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10055
Genomic locus:	chr10:62345319-62367748
Size/Length:	22429 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001253857
Gene Symbol:	Tet1
Chromosome:	chr10
TSS:	62267317 (Transcription start site)
TES:	62342762 (Transcription end site)
Strand:	-
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr10:62345319-62367748
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10055

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033632	mSE_10055	chr10	62345319	62346124	805	185.93
CM033633	mSE_10055	chr10	62346284	62351303	5019	3100
CM033634	mSE_10055	chr10	62351757	62352487	730	195.6
CM033635	mSE_10055	chr10	62352925	62354888	1963	1608.18
CM033636	mSE_10055	chr10	62354951	62360643	5692	3100
CM033637	mSE_10055	chr10	62360698	62362076	1378	1526.24
CM033638	mSE_10055	chr10	62362754	62363482	728	260.96
CM033639	mSE_10055	chr10	62364107	62366405	2298	2540.32
CM033640	mSE_10055	chr10	62366619	62367748	1129	299.87