Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10056
Genomic locus:	chr16:22397178-22443173
Size/Length:	45995 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_023794
Gene Symbol:	Etv5
Chromosome:	chr16
TSS:	22381385 (Transcription start site)
TES:	22439643 (Transcription end site)
Strand:	-
Number of Exons:	13
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr16:22397178-22443173
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10056

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034895	mSE_10056	chr16	22397178	22398703	1525	296.32
CM034896	mSE_10056	chr16	22398924	22400649	1725	539.56
CM034897	mSE_10056	chr16	22400836	22401835	999	247.95
CM034898	mSE_10056	chr16	22402480	22404539	2059	798.83
CM034899	mSE_10056	chr16	22404665	22408012	3347	2589.19
CM034900	mSE_10056	chr16	22408117	22410609	2492	414.05
CM034901	mSE_10056	chr16	22410650	22415659	5009	3100
CM034902	mSE_10056	chr16	22416215	22418893	2678	2372.28
CM034903	mSE_10056	chr16	22426265	22427718	1453	456.08
CM034904	mSE_10056	chr16	22427797	22431425	3628	3100
CM034905	mSE_10056	chr16	22434114	22434752	638	229.38
CM034906	mSE_10056	chr16	22434785	22435590	805	118.38
CM034907	mSE_10056	chr16	22438739	22439534	795	117.26
CM034908	mSE_10056	chr16	22439998	22443173	3175	584.3