Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10057
Genomic locus:	chr15:25652908-25711620
Size/Length:	58712 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001034851
Gene Symbol:	Fam134b
Chromosome:	chr15
TSS:	25773052 (Transcription start site)
TES:	25903451 (Transcription end site)
Strand:	+
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr15:25652908-25711620
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10057

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034676	mSE_10057	chr15	25652908	25654032	1124	151.83
CM034677	mSE_10057	chr15	25658051	25659111	1060	205.84
CM034678	mSE_10057	chr15	25668891	25671021	2130	803.62
CM034679	mSE_10057	chr15	25680379	25681898	1519	695.91
CM034680	mSE_10057	chr15	25681916	25683511	1595	823.59
CM034681	mSE_10057	chr15	25683534	25685630	2096	2733.56
CM034682	mSE_10057	chr15	25685670	25686612	942	432.65
CM034683	mSE_10057	chr15	25687691	25696293	8602	3100
CM034684	mSE_10057	chr15	25696594	25700766	4172	1731.29
CM034685	mSE_10057	chr15	25701025	25704620	3595	1675.11
CM034686	mSE_10057	chr15	25709159	25711620	2461	209.99