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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10058
Genomic locus: chr13:44792581-44871307
Size/Length: 78726 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_021878
Gene Symbol: Jarid2
Chromosome: chr13
TSS: 44826142 (Transcription start site)
TES: 45017012 (Transcription end site)
Strand: +
Number of Exons: 19
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr13:44792581-44871307
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10058

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034431 mSE_10058 chr13 44792581 44793334 753 112.11
CM034432 mSE_10058 chr13 44796634 44798290 1656 232.26
CM034433 mSE_10058 chr13 44798324 44804869 6545 3100
CM034434 mSE_10058 chr13 44804928 44808086 3158 2554.91
CM034435 mSE_10058 chr13 44810447 44812559 2112 815.33
CM034436 mSE_10058 chr13 44812669 44814168 1499 456.02
CM034437 mSE_10058 chr13 44815822 44817625 1803 756.73
CM034438 mSE_10058 chr13 44817823 44820186 2363 1832.93
CM034439 mSE_10058 chr13 44823484 44824343 859 132.28
CM034440 mSE_10058 chr13 44824596 44825786 1190 763.3
CM034441 mSE_10058 chr13 44825923 44826670 747 205.12
CM034442 mSE_10058 chr13 44826811 44827878 1067 292.35
CM034443 mSE_10058 chr13 44828289 44828986 697 365.4
CM034444 mSE_10058 chr13 44829082 44830222 1140 118.8
CM034445 mSE_10058 chr13 44830895 44831584 689 149.19
CM034446 mSE_10058 chr13 44842930 44843760 830 327.44
CM034447 mSE_10058 chr13 44850641 44851151 510 114.18
CM034448 mSE_10058 chr13 44863311 44863764 453 108.44
CM034449 mSE_10058 chr13 44870813 44871307 494 132.15