Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10059
Genomic locus:	chr6:125360021-125406218
Size/Length:	46197 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_198604
Gene Symbol:	Plekhg6
Chromosome:	chr6
TSS:	125312668 (Transcription start site)
TES:	125330522 (Transcription end site)
Strand:	-
Number of Exons:	17
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr6:125360021-125406218
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10059

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036698	mSE_10059	chr6	125360021	125362526	2505	870.36
CM036699	mSE_10059	chr6	125371225	125372580	1355	188.53
CM036700	mSE_10059	chr6	125372715	125376484	3769	1398.99
CM036701	mSE_10059	chr6	125376565	125377192	627	103.91
CM036702	mSE_10059	chr6	125379417	125382241	2824	1241.09
CM036703	mSE_10059	chr6	125382384	125386547	4163	3100
CM036704	mSE_10059	chr6	125386694	125388096	1402	246.94
CM036705	mSE_10059	chr6	125391448	125394357	2909	1377.97
CM036706	mSE_10059	chr6	125395342	125400266	4924	2900.85
CM036707	mSE_10059	chr6	125403597	125405234	1637	446.87
CM036708	mSE_10059	chr6	125405375	125406218	843	139.25