Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10061
Genomic locus:	chr8:93336045-93406848
Size/Length:	70803 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_177224
Gene Symbol:	Chd9
Chromosome:	chr8
TSS:	93352733 (Transcription start site)
TES:	93578407 (Transcription end site)
Strand:	+
Number of Exons:	40
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr8:93336045-93406848
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10061

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037287	mSE_10061	chr8	93336045	93336571	526	134.58
CM037288	mSE_10061	chr8	93336779	93338764	1985	474.51
CM037289	mSE_10061	chr8	93345476	93347642	2166	406.51
CM037290	mSE_10061	chr8	93347656	93350440	2784	2025.64
CM037291	mSE_10061	chr8	93350635	93351237	602	289.38
CM037292	mSE_10061	chr8	93351407	93356241	4834	3100
CM037293	mSE_10061	chr8	93356322	93358601	2279	626.11
CM037294	mSE_10061	chr8	93362999	93367276	4277	1063.49
CM037295	mSE_10061	chr8	93375465	93376485	1020	295.36
CM037296	mSE_10061	chr8	93377663	93379625	1962	433.55
CM037297	mSE_10061	chr8	93380270	93381963	1693	324.66
CM037298	mSE_10061	chr8	93385105	93386578	1473	491.63
CM037299	mSE_10061	chr8	93393202	93395083	1881	404.6
CM037300	mSE_10061	chr8	93399849	93402017	2168	302.35
CM037301	mSE_10061	chr8	93405349	93406848	1499	373.68