Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10063
Genomic locus:	chr5:135401703-135458055
Size/Length:	56352 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_009903
Gene Symbol:	Cldn4
Chromosome:	chr5
TSS:	135420992 (Transcription start site)
TES:	135422804 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr5:135401703-135458055
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10063

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036512	mSE_10063	chr5	135401703	135402617	914	256.76
CM036513	mSE_10063	chr5	135402720	135403488	768	159.81
CM036514	mSE_10063	chr5	135408120	135408851	731	202.58
CM036515	mSE_10063	chr5	135411444	135415394	3950	1093.42
CM036516	mSE_10063	chr5	135416037	135424288	8251	3100
CM036517	mSE_10063	chr5	135426346	135428704	2358	592.03
CM036518	mSE_10063	chr5	135432975	135434124	1149	101.72
CM036519	mSE_10063	chr5	135436115	135437633	1518	125.72
CM036520	mSE_10063	chr5	135439035	135439903	868	123.41
CM036521	mSE_10063	chr5	135441563	135446057	4494	1770.43
CM036522	mSE_10063	chr5	135446066	135447467	1401	588.4
CM036523	mSE_10063	chr5	135448039	135450603	2564	584.88
CM036524	mSE_10063	chr5	135456317	135458055	1738	569.2