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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10064
Genomic locus: chr14:99698616-99758381
Size/Length: 59765 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_009769
Gene Symbol: Klf5
Chromosome: chr14
TSS: 99697909 (Transcription start site)
TES: 99712628 (Transcription end site)
Strand: +
Number of Exons: 4
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr14:99698616-99758381
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10064

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034631 mSE_10064 chr14 99698616 99700743 2127 306.95
CM034632 mSE_10064 chr14 99706265 99707315 1050 213.26
CM034633 mSE_10064 chr14 99707547 99708280 733 201.99
CM034634 mSE_10064 chr14 99708864 99709795 931 137.16
CM034635 mSE_10064 chr14 99710324 99711245 921 255.56
CM034636 mSE_10064 chr14 99714226 99715198 972 476.85
CM034637 mSE_10064 chr14 99715437 99715920 483 114.18
CM034638 mSE_10064 chr14 99719857 99720685 828 96.54
CM034639 mSE_10064 chr14 99722363 99725611 3248 2244.81
CM034640 mSE_10064 chr14 99725688 99726743 1055 322.72
CM034641 mSE_10064 chr14 99732102 99734310 2208 511.25
CM034642 mSE_10064 chr14 99734540 99736039 1499 172.01
CM034643 mSE_10064 chr14 99736356 99737500 1144 640.8
CM034644 mSE_10064 chr14 99737982 99741309 3327 3100
CM034645 mSE_10064 chr14 99741379 99742262 883 191.89
CM034646 mSE_10064 chr14 99746046 99746442 396 102.68
CM034647 mSE_10064 chr14 99746447 99750163 3716 3100
CM034648 mSE_10064 chr14 99750230 99751233 1003 464.66
CM034649 mSE_10064 chr14 99751395 99752624 1229 638.3
CM034650 mSE_10064 chr14 99752816 99755923 3107 3100
CM034651 mSE_10064 chr14 99757950 99758381 431 137.1