Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10065
Genomic locus:	chr11:8465696-8506355
Size/Length:	40659 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001083587
Gene Symbol:	Tns3
Chromosome:	chr11
TSS:	8331654 (Transcription start site)
TES:	8564538 (Transcription end site)
Strand:	-
Number of Exons:	31
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:8465696-8506355
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10065

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033809	mSE_10065	chr11	8465696	8467922	2226	1219.78
CM033810	mSE_10065	chr11	8467930	8468838	908	305.62
CM033811	mSE_10065	chr11	8468839	8477388	8549	1675.56
CM033812	mSE_10065	chr11	8477484	8479231	1747	206.79
CM033813	mSE_10065	chr11	8483365	8488244	4879	3100
CM033814	mSE_10065	chr11	8488722	8490246	1524	860.6
CM033815	mSE_10065	chr11	8490392	8490917	525	152.78
CM033816	mSE_10065	chr11	8501341	8502111	770	233.25
CM033817	mSE_10065	chr11	8503973	8504687	714	135.92
CM033818	mSE_10065	chr11	8504727	8506355	1628	395.64