Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10066
Genomic locus:	chr19:5777556-5818225
Size/Length:	40669 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NR_002847
Gene Symbol:	Malat1
Chromosome:	chr19
TSS:	5795689 (Transcription start site)
TES:	5802671 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr19:5777556-5818225
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10066

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035331	mSE_10066	chr19	5777556	5779461	1905	764.43
CM035332	mSE_10066	chr19	5787255	5788413	1158	117.46
CM035333	mSE_10066	chr19	5793717	5795869	2152	661.33
CM035334	mSE_10066	chr19	5796144	5798412	2268	876.07
CM035335	mSE_10066	chr19	5798555	5799128	573	177.18
CM035336	mSE_10066	chr19	5799755	5802471	2716	2330.44
CM035337	mSE_10066	chr19	5802556	5812257	9701	3100
CM035338	mSE_10066	chr19	5812315	5812889	574	132.91
CM035339	mSE_10066	chr19	5815625	5816911	1286	147.94
CM035340	mSE_10066	chr19	5817618	5818225	607	447.38