Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: mSE_10067
Genomic locus: chr7:87329292-87366712
Size/Length: 37420 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_013659
Gene Symbol: Sema4b
Chromosome: chr7
TSS: 87331726 (Transcription start site)
TES: 87371410 (Transcription end site)
Strand: +
Number of Exons: 15
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr7:87329292-87366712
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10067

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036970 mSE_10067 chr7 87329292 87338224 8932 3100
CM036971 mSE_10067 chr7 87338682 87339487 805 150.21
CM036972 mSE_10067 chr7 87341954 87345978 4024 798.36
CM036973 mSE_10067 chr7 87351295 87355389 4094 813.15
CM036974 mSE_10067 chr7 87364453 87366712 2259 103.41