Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10068
Genomic locus:	chr12:88135175-88177810
Size/Length:	42635 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol:	6430527G18Rik
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr12:88135175-88177810
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10068

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034345	mSE_10068	chr12	88135175	88137909	2734	279.93
CM034346	mSE_10068	chr12	88139646	88141083	1437	428.67
CM034347	mSE_10068	chr12	88141124	88144028	2904	2403.82
CM034348	mSE_10068	chr12	88144675	88147370	2695	316.87
CM034349	mSE_10068	chr12	88147488	88148528	1040	201.68
CM034350	mSE_10068	chr12	88149428	88151148	1720	316.86
CM034351	mSE_10068	chr12	88155514	88159197	3683	1075.78
CM034352	mSE_10068	chr12	88162122	88162641	519	97.49
CM034353	mSE_10068	chr12	88162806	88163605	799	277.1
CM034354	mSE_10068	chr12	88163658	88168197	4539	3100
CM034355	mSE_10068	chr12	88170345	88175034	4689	971.21
CM034356	mSE_10068	chr12	88176965	88177810	845	191.74