Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10069
Genomic locus:	chr8:37640918-37673821
Size/Length:	32903 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001194941
Gene Symbol:	Dlc1
Chromosome:	chr8
TSS:	37630792 (Transcription start site)
TES:	37796108 (Transcription end site)
Strand:	-
Number of Exons:	14
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr8:37640918-37673821
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10069

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037173	mSE_10069	chr8	37640918	37643029	2111	348.52
CM037174	mSE_10069	chr8	37643219	37644993	1774	1249
CM037175	mSE_10069	chr8	37645233	37646908	1675	337.96
CM037176	mSE_10069	chr8	37654209	37660119	5910	3100
CM037177	mSE_10069	chr8	37660882	37661738	856	305.35
CM037178	mSE_10069	chr8	37662153	37664389	2236	926.82
CM037179	mSE_10069	chr8	37664421	37668833	4412	3100
CM037180	mSE_10069	chr8	37669328	37670245	917	118.15
CM037181	mSE_10069	chr8	37670327	37670835	508	101.62
CM037182	mSE_10069	chr8	37671169	37672705	1536	1182.11
CM037183	mSE_10069	chr8	37672841	37673821	980	238.46