Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10070
Genomic locus:	chr17:71086732-71131247
Size/Length:	44515 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_009372
Gene Symbol:	Tgif1
Chromosome:	chr17
TSS:	71193544 (Transcription start site)
TES:	71200550 (Transcription end site)
Strand:	-
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr17:71086732-71131247
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10070

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035166	mSE_10070	chr17	71086732	71087740	1008	517.43
CM035167	mSE_10070	chr17	71087829	71089069	1240	323.3
CM035168	mSE_10070	chr17	71095711	71099231	3520	3100
CM035169	mSE_10070	chr17	71099464	71101908	2444	3100
CM035170	mSE_10070	chr17	71102102	71105906	3804	1460.25
CM035171	mSE_10070	chr17	71106020	71106812	792	141.93
CM035172	mSE_10070	chr17	71114968	71116295	1327	164.1
CM035173	mSE_10070	chr17	71121015	71122124	1109	690.94
CM035174	mSE_10070	chr17	71122186	71122737	551	98.33
CM035175	mSE_10070	chr17	71128087	71129312	1225	724.22
CM035176	mSE_10070	chr17	71129447	71131247	1800	201.69