Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10071
Genomic locus:	chr12:111925850-111964204
Size/Length:	38354 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_010480
Gene Symbol:	Hsp90aa1
Chromosome:	chr12
TSS:	111929245 (Transcription start site)
TES:	111934605 (Transcription end site)
Strand:	-
Number of Exons:	11
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr12:111925850-111964204
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10071

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034394	mSE_10071	chr12	111925850	111927613	1763	522.44
CM034395	mSE_10071	chr12	111927617	111928130	513	106.56
CM034396	mSE_10071	chr12	111928133	111929348	1215	365.37
CM034397	mSE_10071	chr12	111931717	111932203	486	119.21
CM034398	mSE_10071	chr12	111933491	111934618	1127	195.04
CM034399	mSE_10071	chr12	111934730	111937942	3212	2771.99
CM034400	mSE_10071	chr12	111937998	111943754	5756	3100
CM034401	mSE_10071	chr12	111944129	111946536	2407	897.08
CM034402	mSE_10071	chr12	111948049	111950350	2301	674.18
CM034403	mSE_10071	chr12	111962580	111964204	1624	1109.14