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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10072
Genomic locus: chr4:55472388-55494972
Size/Length: 22584 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_010637
Gene Symbol: Klf4
Chromosome: chr4
TSS: 55540008 (Transcription start site)
TES: 55545347 (Transcription end site)
Strand: -
Number of Exons: 5
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr4:55472388-55494972
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10072

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036049 mSE_10072 chr4 55472388 55473011 623 131.04
CM036050 mSE_10072 chr4 55474834 55475690 856 277.89
CM036051 mSE_10072 chr4 55475755 55479761 4006 3100
CM036052 mSE_10072 chr4 55482313 55485424 3111 1353.83
CM036053 mSE_10072 chr4 55485489 55492671 7182 3100
CM036054 mSE_10072 chr4 55492756 55494972 2216 731.95