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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10073
Genomic locus: chr1:37038682-37059875
Size/Length: 21193 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_018872
Gene Symbol: Tmem131
Chromosome: chr1
TSS: 36849033 (Transcription start site)
TES: 36996372 (Transcription end site)
Strand: -
Number of Exons: 41
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr1:37038682-37059875
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10073

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033323 mSE_10073 chr1 37038682 37040236 1554 828.19
CM033324 mSE_10073 chr1 37040247 37042936 2689 3100
CM033325 mSE_10073 chr1 37042951 37048131 5180 3100
CM033326 mSE_10073 chr1 37053073 37054435 1362 346
CM033327 mSE_10073 chr1 37056497 37057158 661 218.28
CM033328 mSE_10073 chr1 37057210 37057928 718 315.31
CM033329 mSE_10073 chr1 37058025 37059383 1358 1204.6
CM033330 mSE_10073 chr1 37059395 37059875 480 166.52