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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10075
Genomic locus: chr3:135167970-135245850
Size/Length: 77880 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_027288
Gene Symbol: Manba
Chromosome: chr3
TSS: 135148574 (Transcription start site)
TES: 135234367 (Transcription end site)
Strand: +
Number of Exons: 17
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr3:135167970-135245850
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10075

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM035978 mSE_10075 chr3 135167970 135169872 1902 1383.76
CM035979 mSE_10075 chr3 135170609 135171345 736 112.03
CM035980 mSE_10075 chr3 135176189 135177727 1538 395.81
CM035981 mSE_10075 chr3 135181765 135182387 622 92.66
CM035982 mSE_10075 chr3 135182535 135183414 879 106.35
CM035983 mSE_10075 chr3 135184458 135187294 2836 1011.99
CM035984 mSE_10075 chr3 135194374 135195265 891 114.78
CM035985 mSE_10075 chr3 135195667 135196398 731 115.23
CM035986 mSE_10075 chr3 135196886 135197691 805 223.27
CM035987 mSE_10075 chr3 135199987 135200587 600 101.6
CM035988 mSE_10075 chr3 135204442 135205597 1155 322.2
CM035989 mSE_10075 chr3 135205939 135207010 1071 254.79
CM035990 mSE_10075 chr3 135207046 135207380 334 171.49
CM035991 mSE_10075 chr3 135207500 135207974 474 367.38
CM035992 mSE_10075 chr3 135208090 135210643 2553 3100
CM035993 mSE_10075 chr3 135211183 135212952 1769 2006.65
CM035994 mSE_10075 chr3 135213347 135213859 512 159.77
CM035995 mSE_10075 chr3 135213970 135214433 463 210.82
CM035996 mSE_10075 chr3 135214766 135215435 669 239.96
CM035997 mSE_10075 chr3 135215467 135216023 556 179.65
CM035998 mSE_10075 chr3 135216360 135216938 578 307.53
CM035999 mSE_10075 chr3 135217323 135218546 1223 608.48
CM036000 mSE_10075 chr3 135218774 135220236 1462 486.86
CM036001 mSE_10075 chr3 135224747 135225956 1209 329.8
CM036002 mSE_10075 chr3 135226000 135227533 1533 150.33
CM036003 mSE_10075 chr3 135230147 135231078 931 95.71
CM036004 mSE_10075 chr3 135232436 135233033 597 131.33
CM036005 mSE_10075 chr3 135234547 135235734 1187 267.85
CM036006 mSE_10075 chr3 135236144 135237467 1323 211.27
CM036007 mSE_10075 chr3 135242709 135243837 1128 101.62
CM036008 mSE_10075 chr3 135243942 135245850 1908 179.06