Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10076
Genomic locus:	chr18:38525639-38546357
Size/Length:	20718 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_011937
Gene Symbol:	Gnpda1
Chromosome:	chr18
TSS:	38487190 (Transcription start site)
TES:	38498647 (Transcription end site)
Strand:	-
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr18:38525639-38546357
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10076

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035250	mSE_10076	chr18	38525639	38526765	1126	416.24
CM035251	mSE_10076	chr18	38526790	38528360	1570	1149.85
CM035252	mSE_10076	chr18	38530625	38534009	3384	2393
CM035253	mSE_10076	chr18	38534471	38541431	6960	3100
CM035254	mSE_10076	chr18	38542840	38543391	551	95.19
CM035255	mSE_10076	chr18	38543444	38546357	2913	3100