Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10077
Genomic locus:	chr9:78325295-78377182
Size/Length:	51887 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_010106
Gene Symbol:	Eef1a1
Chromosome:	chr9
TSS:	78326260 (Transcription start site)
TES:	78329531 (Transcription end site)
Strand:	-
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr9:78325295-78377182
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10077

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037537	mSE_10077	chr9	78325295	78326076	781	147.71
CM037538	mSE_10077	chr9	78326525	78329473	2948	1430.31
CM037539	mSE_10077	chr9	78329729	78330846	1117	840.69
CM037540	mSE_10077	chr9	78336004	78337201	1197	494.73
CM037541	mSE_10077	chr9	78348239	78348666	427	91.23
CM037542	mSE_10077	chr9	78349711	78353403	3692	3100
CM037543	mSE_10077	chr9	78353656	78354884	1228	181.35
CM037544	mSE_10077	chr9	78366504	78367074	570	98.55
CM037545	mSE_10077	chr9	78367474	78370161	2687	1841.68
CM037546	mSE_10077	chr9	78370253	78371384	1131	226.94
CM037547	mSE_10077	chr9	78372282	78377182	4900	3100