Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10078
Genomic locus:	chr11:97514895-97558533
Size/Length:	43638 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001085500
Gene Symbol:	Cisd3
Chromosome:	chr11
TSS:	97547265 (Transcription start site)
TES:	97549939 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:97514895-97558533
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10078

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034115	mSE_10078	chr11	97514895	97515579	684	138.14
CM034116	mSE_10078	chr11	97516406	97517695	1289	226.23
CM034117	mSE_10078	chr11	97517715	97521687	3972	2099.31
CM034118	mSE_10078	chr11	97521791	97524680	2889	3100
CM034119	mSE_10078	chr11	97524872	97527747	2875	1462.27
CM034120	mSE_10078	chr11	97529114	97534859	5745	1832.43
CM034121	mSE_10078	chr11	97538302	97539789	1487	289.31
CM034122	mSE_10078	chr11	97542594	97544376	1782	477.74
CM034123	mSE_10078	chr11	97544448	97549418	4970	99.32
CM034124	mSE_10078	chr11	97557349	97558533	1184	255.89