Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10079
Genomic locus:	chr5:136410909-136452441
Size/Length:	41532 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol:	Srcrb4d
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr5:136410909-136452441
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10079

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036537	mSE_10079	chr5	136410909	136413627	2718	2022.99
CM036538	mSE_10079	chr5	136416273	136417150	877	100.08
CM036539	mSE_10079	chr5	136417933	136419049	1116	271.43
CM036540	mSE_10079	chr5	136421249	136423807	2558	1649.21
CM036541	mSE_10079	chr5	136425965	136429109	3144	2910.53
CM036542	mSE_10079	chr5	136431390	136431922	532	104.51
CM036543	mSE_10079	chr5	136431926	136434879	2953	3130.7
CM036544	mSE_10079	chr5	136434944	136436214	1270	239.32
CM036545	mSE_10079	chr5	136436481	136438569	2088	1853
CM036546	mSE_10079	chr5	136438675	136439640	965	190.71
CM036547	mSE_10079	chr5	136451431	136452441	1010	156.32