Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10080
Genomic locus:	chr7:140287516-140317261
Size/Length:	29745 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001170744
Gene Symbol:	Ctbp2
Chromosome:	chr7
TSS:	140178693 (Transcription start site)
TES:	140206930 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr7:140287516-140317261
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10080

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037034	mSE_10080	chr7	140287516	140288074	558	107.26
CM037035	mSE_10080	chr7	140288884	140291335	2451	566.57
CM037036	mSE_10080	chr7	140291397	140292319	922	153.24
CM037037	mSE_10080	chr7	140303040	140306981	3941	3100
CM037038	mSE_10080	chr7	140306987	140309989	3002	3023.7
CM037039	mSE_10080	chr7	140310091	140311335	1244	508.5
CM037040	mSE_10080	chr7	140311427	140312599	1172	390.7
CM037041	mSE_10080	chr7	140312738	140315120	2382	1824.54
CM037042	mSE_10080	chr7	140315228	140317261	2033	1385.36