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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10081
Genomic locus: chr4:10902909-10981195
Size/Length: 78286 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_175175
Gene Symbol: Plekhf2
Chromosome: chr4
TSS: 10915808 (Transcription start site)
TES: 10934766 (Transcription end site)
Strand: -
Number of Exons: 2
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr4:10902909-10981195
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10081

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036016 mSE_10081 chr4 10902909 10903512 603 186.16
CM036017 mSE_10081 chr4 10903935 10904828 893 109.1
CM036018 mSE_10081 chr4 10912632 10913222 590 90.46
CM036019 mSE_10081 chr4 10922247 10922937 690 136.97
CM036020 mSE_10081 chr4 10922995 10924106 1111 442.87
CM036021 mSE_10081 chr4 10931864 10934772 2908 557.99
CM036022 mSE_10081 chr4 10934907 10936118 1211 1415.35
CM036023 mSE_10081 chr4 10939455 10941269 1814 1369.47
CM036024 mSE_10081 chr4 10941423 10944997 3574 3051.61
CM036025 mSE_10081 chr4 10948194 10949499 1305 438.74
CM036026 mSE_10081 chr4 10951099 10951790 691 130.08
CM036027 mSE_10081 chr4 10958304 10958769 465 118.47
CM036028 mSE_10081 chr4 10958963 10959388 425 102.7
CM036029 mSE_10081 chr4 10959629 10960616 987 431.05
CM036030 mSE_10081 chr4 10962825 10963591 766 205.54
CM036031 mSE_10081 chr4 10968888 10970347 1459 456.95
CM036032 mSE_10081 chr4 10970902 10972058 1156 1064.8
CM036033 mSE_10081 chr4 10972332 10973128 796 1030.78
CM036034 mSE_10081 chr4 10974317 10974804 487 98.66
CM036035 mSE_10081 chr4 10974806 10975606 800 130.08
CM036036 mSE_10081 chr4 10979710 10981195 1485 637.63