Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10083
Genomic locus:	chr15:77165745-77198737
Size/Length:	32992 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol:	Rbm9
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr15:77165745-77198737
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10083

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034727	mSE_10083	chr15	77165745	77171343	5598	3100
CM034728	mSE_10083	chr15	77173273	77175755	2482	426.27
CM034729	mSE_10083	chr15	77177708	77179183	1475	674.73
CM034730	mSE_10083	chr15	77182914	77184727	1813	96.34
CM034731	mSE_10083	chr15	77184834	77187829	2995	3078.13
CM034732	mSE_10083	chr15	77187928	77190862	2934	1291.9
CM034733	mSE_10083	chr15	77194008	77195111	1103	90.57
CM034734	mSE_10083	chr15	77196301	77198737	2436	600.37