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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10084
Genomic locus: chr6:64951231-65025843
Size/Length: 74612 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_007958
Gene Symbol: Smarcad1
Chromosome: chr6
TSS: 64992660 (Transcription start site)
TES: 65066043 (Transcription end site)
Strand: +
Number of Exons: 24
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr6:64951231-65025843
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10084

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036602 mSE_10084 chr6 64951231 64951964 733 226.39
CM036603 mSE_10084 chr6 64952284 64953495 1211 439.49
CM036604 mSE_10084 chr6 64958389 64959280 891 261.53
CM036605 mSE_10084 chr6 64961397 64963386 1989 903.13
CM036606 mSE_10084 chr6 64964689 64965629 940 174.8
CM036607 mSE_10084 chr6 64965674 64966218 544 116.5
CM036608 mSE_10084 chr6 64967300 64967751 451 139.35
CM036609 mSE_10084 chr6 64968289 64970280 1991 1254.01
CM036610 mSE_10084 chr6 64970443 64976890 6447 3100
CM036611 mSE_10084 chr6 64976921 64977776 855 333.36
CM036612 mSE_10084 chr6 64977989 64978558 569 181.77
CM036613 mSE_10084 chr6 64984091 64984704 613 153.8
CM036614 mSE_10084 chr6 64991809 64992313 504 109.43
CM036615 mSE_10084 chr6 64992320 64994141 1821 609.96
CM036616 mSE_10084 chr6 64996539 64997318 779 276.23
CM036617 mSE_10084 chr6 65006384 65007183 799 272.91
CM036618 mSE_10084 chr6 65008024 65008492 468 146.89
CM036619 mSE_10084 chr6 65009188 65009597 409 192.56
CM036620 mSE_10084 chr6 65009722 65011239 1517 688.08
CM036621 mSE_10084 chr6 65011505 65011933 428 92.56
CM036622 mSE_10084 chr6 65013783 65014416 633 114.08
CM036623 mSE_10084 chr6 65025269 65025843 574 107.9