Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: mSE_10085
Genomic locus: chr11:97136728-97188557
Size/Length: 51829 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_025927
Gene Symbol: Mrpl45
Chromosome: chr11
TSS: 97177029 (Transcription start site)
TES: 97191234 (Transcription end site)
Strand: +
Number of Exons: 8
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr11:97136728-97188557
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10085

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM034088 mSE_10085 chr11 97136728 97137295 567 103.34
CM034089 mSE_10085 chr11 97138007 97138763 756 138.9
CM034090 mSE_10085 chr11 97139134 97139794 660 113.32
CM034091 mSE_10085 chr11 97139868 97141834 1966 659.23
CM034092 mSE_10085 chr11 97141986 97144867 2881 2504.43
CM034093 mSE_10085 chr11 97145196 97145935 739 135.74
CM034094 mSE_10085 chr11 97147180 97149060 1880 1777.72
CM034095 mSE_10085 chr11 97149125 97149756 631 129.86
CM034096 mSE_10085 chr11 97149857 97151836 1979 943.8
CM034097 mSE_10085 chr11 97154229 97154708 479 140.83
CM034098 mSE_10085 chr11 97162805 97164832 2027 661.08
CM034099 mSE_10085 chr11 97167769 97169719 1950 1178.62
CM034100 mSE_10085 chr11 97170544 97173346 2802 3100
CM034101 mSE_10085 chr11 97175880 97176441 561 210.68
CM034102 mSE_10085 chr11 97177125 97177734 609 188.5
CM034103 mSE_10085 chr11 97183651 97184067 416 288.1
CM034104 mSE_10085 chr11 97188016 97188557 541 106.55