Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10086
Genomic locus:	chr9:110840231-110868400
Size/Length:	28169 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_028838
Gene Symbol:	Lrrc2
Chromosome:	chr9
TSS:	110854048 (Transcription start site)
TES:	110886568 (Transcription end site)
Strand:	+
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr9:110840231-110868400
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10086

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037572	mSE_10086	chr9	110840231	110842119	1888	707.26
CM037573	mSE_10086	chr9	110843196	110845853	2657	368.48
CM037574	mSE_10086	chr9	110846408	110853047	6639	3100
CM037575	mSE_10086	chr9	110853160	110857993	4833	2565.51
CM037576	mSE_10086	chr9	110862032	110864360	2328	1394.26
CM037577	mSE_10086	chr9	110867688	110868400	712	114.03