Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10087
Genomic locus:	chr9:78206091-78226646
Size/Length:	20555 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_025274
Gene Symbol:	Dppa5a
Chromosome:	chr9
TSS:	78214860 (Transcription start site)
TES:	78216006 (Transcription end site)
Strand:	-
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr9:78206091-78226646
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10087

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037532	mSE_10087	chr9	78206091	78206831	740	114.49
CM037533	mSE_10087	chr9	78206933	78209836	2903	1870.66
CM037534	mSE_10087	chr9	78210814	78214487	3673	2493.23
CM037535	mSE_10087	chr9	78215994	78219518	3524	3100
CM037536	mSE_10087	chr9	78219863	78226646	6783	3100