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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10088
Genomic locus: chr11:77689105-77731789
Size/Length: 42684 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_008952
Gene Symbol: Pipox
Chromosome: chr11
TSS: 77694116 (Transcription start site)
TES: 77707374 (Transcription end site)
Strand: -
Number of Exons: 8
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr11:77689105-77731789
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10088

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033988 mSE_10088 chr11 77689105 77691216 2111 493.03
CM033989 mSE_10088 chr11 77696996 77698058 1062 674.58
CM033990 mSE_10088 chr11 77698129 77701620 3491 2225.42
CM033991 mSE_10088 chr11 77703637 77705131 1494 450.48
CM033992 mSE_10088 chr11 77705288 77708305 3017 2340.6
CM033993 mSE_10088 chr11 77708306 77709451 1145 184.85
CM033994 mSE_10088 chr11 77716339 77720905 4566 3100
CM033995 mSE_10088 chr11 77729147 77731789 2642 1194.07