Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10090
Genomic locus:	chr7:3333165-3372803
Size/Length:	39638 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_133189
Gene Symbol:	Cacng7
Chromosome:	chr7
TSS:	3336684 (Transcription start site)
TES:	3366537 (Transcription end site)
Strand:	+
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr7:3333165-3372803
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10090

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM036773	mSE_10090	chr7	3333165	3334066	901	92.45
CM036774	mSE_10090	chr7	3345784	3350480	4696	3100
CM036775	mSE_10090	chr7	3352104	3354099	1995	249.12
CM036776	mSE_10090	chr7	3359593	3360659	1066	934.59
CM036777	mSE_10090	chr7	3364339	3367572	3233	3100
CM036778	mSE_10090	chr7	3367733	3369767	2034	1174.88
CM036779	mSE_10090	chr7	3369827	3371569	1742	874.36
CM036780	mSE_10090	chr7	3371931	3372803	872	205.1