Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10091
Genomic locus:	chr9:65440232-65490924
Size/Length:	50692 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_028030
Gene Symbol:	Rbpms2
Chromosome:	chr9
TSS:	65478388 (Transcription start site)
TES:	65508325 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr9:65440232-65490924
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10091

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037510	mSE_10091	chr9	65440232	65442651	2419	1096.63
CM037511	mSE_10091	chr9	65448289	65448967	678	147.48
CM037512	mSE_10091	chr9	65451162	65452505	1343	231.18
CM037513	mSE_10091	chr9	65453472	65455533	2061	1556.77
CM037514	mSE_10091	chr9	65465561	65466166	605	242.27
CM037515	mSE_10091	chr9	65466289	65466834	545	90.68
CM037516	mSE_10091	chr9	65467114	65468210	1096	519.41
CM037517	mSE_10091	chr9	65476346	65478264	1918	1281.17
CM037518	mSE_10091	chr9	65478405	65480546	2141	269.02
CM037519	mSE_10091	chr9	65482858	65487636	4778	2314.78
CM037520	mSE_10091	chr9	65487689	65490924	3235	3100